Basic Information
Locus ID:
BniB04g033520.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 17813713 | 17815906 | - | BniB04g033520.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 62,364.75 Da | 34.08 | 86.17 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 449 | 510 | 6.03531E-17 | IPR002048 |
| CDD | cd05117 | STKc_CAMK | 70 | 328 | 4.32607E-139 | - |
| Pfam | PF13499 | EF-hand domain pair | 450 | 510 | 1.7E-11 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 375 | 436 | 4.8E-8 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 73 | 329 | 1.2E-73 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 67 | 337 | 8.5E-87 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 357 | 536 | 7.64E-42 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 338 | 513 | 9.7E-50 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 157 | 337 | 3.7E-60 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 72 | 156 | 4.3E-28 | - |
| SMART | SM00054 | efh_1 | 484 | 512 | 8.2E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 376 | 404 | 3.5E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 412 | 440 | 7.5E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 448 | 476 | 0.06 | IPR002048 |
| SMART | SM00220 | serkin_6 | 71 | 329 | 3.2E-98 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 71 | 329 | 48.526981 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 372 | 407 | 14.318138 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 408 | 443 | 10.747526 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 480 | 515 | 13.369694 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 444 | 479 | 12.337564 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 493 | 505 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 191 | 203 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 385 | 397 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 421 | 433 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 77 | 100 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18890.1 | calcium-dependent protein kinase 1. encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro. | 0 |
| RefSeq | XP_013715645.2 | calcium-dependent protein kinase 10 [Brassica napus] | 0 |
| Q9M9V8 | Calcium-dependent protein kinase 10 OS=Arabidopsis thaliana OX=3702 GN=CPK10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7SA22 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_031910 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology