Basic Information
Locus ID:
BniB04g032310.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 17209646 | 17213018 | + | BniB04g032310.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 116,054.19 Da | 34.35 | 104.16 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 625 | 640 | 1.0 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 123 | 182 | 1.7E-9 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 482 | 541 | 9.4E-8 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 794 | 962 | 1.3E-34 | IPR000719 |
| SUPERFAMILY | SSF52047 | RNI-like | 379 | 694 | 1.96E-57 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 779 | 1047 | 3.51E-57 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 129 | 471 | 1.41E-60 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 6 | 183 | 7.77E-36 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 964 | 1064 | 6.8E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 237 | 5.8E-68 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 868 | 963 | 2.0E-32 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 481 | 593 | 1.9E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 594 | 713 | 5.9E-25 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 759 | 867 | 2.9E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 413 | 480 | 6.6E-16 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 238 | 412 | 2.5E-48 | IPR032675 |
| SMART | SM00220 | serkin_6 | 791 | 1054 | 5.7E-13 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 289 | 313 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 648 | 675 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 73 | 96 | 56.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 145 | 168 | 9.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 434 | 457 | 390.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 169 | 193 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 25 | 49 | 45.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 624 | 646 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 528 | 552 | 14.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 791 | 1054 | 31.961933 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 914 | 926 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 797 | 820 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17750.1 | PEP1 receptor 2. Encodes PEPR2, a plasma membrane leucine-rich repeat receptor kinase functioning as a receptor for the Pep1 and Pep2 peptides. Pep1 and Pep2 are amino acids that induce the transcription of defense-related genes. | 0 |
| RefSeq | XP_022542953.2 | leucine-rich repeat receptor-like protein kinase PEPR2 isoform X2 [Brassica napus] | 0 |
| Q9FZ59 | Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana OX=3702 GN=PEPR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7SJQ3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_034000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17953 |
| Aizoaceae | Mesembryanthemum crystallinum | 5 | gene_10131, gene_10132, gene_11069, gene_9572, gene_9573 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016036 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g074780, BVRB_8g188990 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17418, Sbi_jg25750, Sbi_jg62067, Sbi_jg9575 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19063, Seu_jg679 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007558 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl02629, Sgl24258, Sgl29433, Sgl43984, Sgl48751, Sgl83000 |
| Amaranthaceae | Chenopodium album | 9 | gene:ENSEOMG00000009920, gene:ENSEOMG00000010637 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.8AG0010590, CQ.Regalona.r1.8AG0010610 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30131000, pistato.v30131010, pistato.v30131030 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G012610 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720432 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G10341, Ftri1G13974 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G17750.1, AT1G73080.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018036m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g15830.v2.2, Sp5g28040.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB03g039220.2N, BniB03g053930.2N, BniB03g053940.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2818 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2971 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g08830, gene.Cymno06g07090 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g10900 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.648, evm.TU.LG01.649 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001071 |
| Poaceae | Echinochloa crus-galli | 2 | AH08.1717, CH08.1918 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8BG0661540 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0659090.1, HORVU.MOREX.r3.7HG0669620.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031323, gene-QYE76_031332 |
| Poaceae | Oryza coarctata | 1 | Oco15G013590 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g34640.1, LOC_Os08g34650.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G152300 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr16G014860, Chr17G014300, Chr17G014310 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G302000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC7AG018230, gene_TRIDC7AG025710 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G148600.4, TraesCS7A02G203700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb040920_P001, Zm00001eb177060_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-50498, nbis-gene-58446 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g23073, Zma_g24144 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.3077, evm.TU.LG16.456, evm.TU.LG18.1612 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g19520, gene.Posoc03g14010 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.60361.5, evm.TU.60362.5 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25038 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9372 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21180 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.909 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11090 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21759 |
| Salicaceae | Populus euphratica | 2 | populus_peu05982, populus_peu05991 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633579 |
| Solanaceae | Solanum chilense | 1 | SOLCI004688600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012529 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.15016_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0989 |