Basic Information
Locus ID:
BniB04g031090.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 16637946 | 16654991 | - | BniB04g031090.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 298,218.78 Da | 47.96 | 75.77 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11726 | ADDz_ATRX | 460 | 554 | 1.0977E-35 | - |
| CDD | cd18793 | SF2_C_SNF | 1095 | 1235 | 3.96017E-53 | - |
| Pfam | PF05964 | F/Y-rich N-terminus | 2426 | 2465 | 8.5E-6 | IPR003888 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 720 | 991 | 1.1E-47 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1102 | 1224 | 8.2E-15 | IPR001650 |
| Pfam | PF05965 | F/Y rich C-terminus | 2473 | 2556 | 2.0E-19 | IPR003889 |
| Pfam | PF02373 | JmjC domain, hydroxylase | 1853 | 1969 | 7.1E-44 | IPR003347 |
| Pfam | PF02928 | C5HC2 zinc finger | 2076 | 2126 | 4.2E-11 | IPR004198 |
| Pfam | PF02375 | jmjN domain | 1609 | 1642 | 1.1E-14 | IPR003349 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 686 | 955 | 2.31E-46 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 961 | 1282 | 6.01E-57 | IPR027417 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 1730 | 2014 | 4.39E-41 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 966 | 1317 | 1.2E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 673 | 955 | 2.6E-77 | IPR038718 |
| Gene3D | G3DSA:3.30.160.360 | - | 2417 | 2554 | 2.7E-23 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1593 | 1970 | 6.1E-152 | - |
| SMART | SM00541 | fyrn_3 | 2424 | 2468 | 1.4E-14 | IPR003888 |
| SMART | SM00558 | cupin_9 | 1820 | 1986 | 1.4E-74 | IPR003347 |
| SMART | SM00545 | JmjN_1 | 1607 | 1648 | 1.2E-21 | IPR003349 |
| SMART | SM00487 | ultradead3 | 697 | 918 | 1.1E-22 | IPR014001 |
| SMART | SM00542 | fyrc_3 | 2474 | 2568 | 2.4E-38 | IPR003889 |
| SMART | SM00490 | helicmild6 | 1134 | 1224 | 2.7E-19 | IPR001650 |
| ProSiteProfiles | PS51543 | FYR domain FYRC motif profile. | 2470 | 2560 | 26.456066 | IPR003889 |
| ProSiteProfiles | PS51183 | JmjN domain profile. | 1608 | 1649 | 18.17882 | IPR003349 |
| ProSiteProfiles | PS51533 | ADD domain profile. | 451 | 580 | 11.776194 | IPR025766 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1101 | 1272 | 15.727341 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 723 | 906 | 16.77762 | IPR014001 |
| ProSiteProfiles | PS51542 | FYR domain FYRN motif profile. | 2410 | 2468 | 22.64547 | IPR003888 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 1820 | 1986 | 42.496944 | IPR003347 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1295 | 1321 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2368 | 2399 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 578 | 601 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 566 | 601 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1294 | 1322 | - | - |
| Coils | Coil | Coil | 1517 | 1537 | - | - |
| Coils | Coil | Coil | 92 | 112 | - | - |
| Coils | Coil | Coil | 557 | 577 | - | - |
| Coils | Coil | Coil | 150 | 177 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08600.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_018436323.1 | PREDICTED: protein CHROMATIN REMODELING 20 [Raphanus sativus] | 0 |
| F4HW51 | Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana OX=3702 GN=ATRX PE=2 SV=2 | 0 | |
| TrEMBL | A0A816S8Q6 | ATP-dependent helicase ATRX OS=Brassica napus OX=3708 GN=DARMORV10_A06P05580.1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2716 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10347 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005595 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g077440 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17305, Sbi_jg61941 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg561 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015470 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24355, Sgl24363, Sgl29528, Sgl29539 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000009165, gene:ENSEOMG00000028688 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0006760, CQ.Regalona.r1.4BG0006890 |
| Apiaceae | Apium graveolens | 1 | Ag8G01171 |
| Arecaceae | Cocos nucifera | 1 | scaffold001442G000100 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720147 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.300.V1.1, AsparagusV1_04.301.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G15386 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G08600.3 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006555m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g07260.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g004270.2N, BniB04g031090.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2408 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2527 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g01910 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g17930 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-7901, nbisL1-mrna-7903 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2177 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012773 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06456 |
| Poaceae | Echinochloa crus-galli | 2 | BH01.2180, CH01.2274 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0126760 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0040050.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011271 |
| Poaceae | Oryza coarctata | 2 | Oco19G005350, Oco20G005280 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G215300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0502490, Pt_Chr0502493, Pt_Chr0502494 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G013430, Chr15G016210 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G267300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG021840, gene_TRIDC1BG025970 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G144000.3, TraesCS1B02G161400.5 ... |
| Poaceae | Zea mays | 1 | Zm00001eb046650_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21251 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13338 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG22.1131 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g06480 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.331 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7899 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8969 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5379 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.217 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011053 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7743 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-300 |
| Salicaceae | Populus euphratica | 4 | populus_peu15998, populus_peu19501, populus_peu25237 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616152 |
| Solanaceae | Solanum chilense | 1 | SOLCI002257600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017879 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17982 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0883 |
| Zosteraceae | Zostera marina | 1 | Zosma03g24490.v3.1 |