Basic Information
Locus ID:
BniB04g029790.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 16061614 | 16072918 | + | BniB04g029790.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 158,470.11 Da | 37.40 | 75.75 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 753 | 1037 | 1.41608E-71 | - |
| CDD | cd10316 | RGL4_M | 1077 | 1176 | 6.06757E-31 | IPR029413 |
| CDD | cd10320 | RGL4_N | 31 | 317 | 8.16407E-75 | - |
| CDD | cd10317 | RGL4_C | 1188 | 1378 | 4.76014E-52 | - |
| CDD | cd10316 | RGL4_M | 351 | 450 | 1.34608E-31 | IPR029413 |
| CDD | cd10317 | RGL4_C | 462 | 643 | 1.39188E-52 | - |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 27 | 218 | 2.3E-92 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 377 | 443 | 1.0E-22 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 740 | 946 | 2.0E-84 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 1186 | 1377 | 2.3E-52 | IPR029411 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 460 | 641 | 3.9E-53 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 1100 | 1172 | 1.4E-21 | IPR029413 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 457 | 641 | 1.28E-42 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 41 | 312 | 3.14E-5 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 347 | 445 | 1.0E-9 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 1184 | 1378 | 1.62E-46 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 754 | 1039 | 1.85E-6 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 1073 | 1162 | 9.22E-8 | IPR013784 |
| Gene3D | G3DSA:2.60.40.1120 | - | 1074 | 1172 | 5.2E-7 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 25 | 324 | 5.4E-8 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 347 | 443 | 2.8E-7 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 748 | 1027 | 2.3E-13 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 457 | 643 | 6.2E-20 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 1184 | 1378 | 9.2E-15 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09880.3 | - | 0 |
| RefSeq | XP_011016984.1 | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105120478 [Populus euphratica] | 0 |
| TrEMBL | A0A8S1ZCU3 | rhamnogalacturonan endolyase OS=Arabidopsis arenosa OX=38785 GN=AARE701A_LOCUS781 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology