Basic Information
Locus ID:
BniB04g028970.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
JAB/MPN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 15658593 | 15660044 | - | BniB04g028970.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 28,107.45 Da | 54.00 | 73.35 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 74 | 251 | 3.23327E-104 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 75 | 180 | 8.5E-16 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 77 | 208 | 7.98E-22 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 61 | 251 | 1.8E-67 | - |
| SMART | SM00232 | pad1_6 | 76 | 204 | 2.4E-11 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 77 | 207 | 29.892967 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10600.1 | associated molecule with the SH3 domain of STAM 2. | 0 |
| RefSeq | XP_009148402.1 | AMSH-like ubiquitin thioesterase 2 [Brassica rapa] | 0 |
| Q6NKP9 | AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana OX=3702 GN=AMSH2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7QDI3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_062418 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology