Basic Information
Locus ID:
BniB04g028310.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
CMT1
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 15332430 | 15336764 | + | BniB04g028310.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 88,946.63 Da | 37.99 | 78.44 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 329 | 386 | 3.34239E-26 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 395 | 753 | 3.0E-35 | IPR001525 |
| Pfam | PF01426 | BAH domain | 72 | 183 | 1.6E-13 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 347 | 385 | 1.9E-8 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 318 | 385 | 1.7E-12 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 216 | 755 | 4.86E-75 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 174 | 552 | 2.9E-149 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 6 | 173 | 2.2E-49 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 553 | 722 | 6.5E-60 | - |
| SMART | SM00298 | chromo_7 | 329 | 389 | 8.8E-11 | IPR000953 |
| SMART | SM00439 | BAH_4 | 69 | 188 | 9.0E-24 | IPR001025 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 399 | 749 | 1.2E-30 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 69 | 188 | 19.849031 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 214 | 763 | 41.936848 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 330 | 384 | 11.598201 | IPR000953 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 354 | 374 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 444 | 458 | 1.5E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 215 | 231 | 1.5E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 490 | 503 | 1.5E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 324 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80740.1 | chromomethylase 1. ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation. | 0 |
| RefSeq | XP_048613945.1 | putative DNA (cytosine-5)-methyltransferase CMT1 [Brassica napus] | 0 |
| O49139 | Putative DNA (cytosine-5)-methyltransferase CMT1 OS=Arabidopsis thaliana OX=3702 GN=CMT1 PE=5 SV=2 | 0 | |
| TrEMBL | A0A0D3C9A7 | DNA (cytosine-5-)-methyltransferase OS=Brassica oleracea var. oleracea OX=109376 GN=106292454 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology