Basic Information
Locus ID:
BniB04g027890.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 15162681 | 15163965 | + | BniB04g027890.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 26,292.56 Da | 41.75 | 78.98 | -0.94 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07106 | TBPIP/Hop2 winged helix domain | 7 | 68 | 1.0E-24 | IPR010776 |
| Pfam | PF18517 | Leucine zipper with capping helix domain | 149 | 206 | 9.9E-18 | IPR040661 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 4 | 74 | 3.73E-5 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 2 | 78 | 1.9E-22 | IPR036388 |
| Coils | Coil | Coil | 81 | 145 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13330.1 | Arabidopsis Hop2 homolog. Encodes the Arabidopsis Hop2 homologue. In other species, Hop2 is proposed to be involved in inter-homolog bias in double strand break repair. | 0 |
| RefSeq | XP_013585772.1 | PREDICTED: homologous-pairing protein 2 homolog [Brassica oleracea var. oleracea] | 0 |
| Q9FX64 | Homologous-pairing protein 2 homolog OS=Arabidopsis thaliana OX=3702 GN=HOP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D3C9E7 | Homologous-pairing protein 2 homolog OS=Brassica oleracea var. oleracea OX=109376 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg7233 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18438 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025861 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g142210 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13809, Sbi_jg52117 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9729 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018880 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34157, Sgl39792 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001288, gene:ENSEOMG00000002182 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0015660 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30225550 |
| Apiaceae | Apium graveolens | 2 | Ag1G00707, Ag5G02037 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G005110 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701006 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1504.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G17476 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G13330.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10008697m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g11840.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g008190.2N, BniB04g027890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2054 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2192 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g08510 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0530s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g24360 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.528 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019297 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01556 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.860, BH01.1005, CH01.1049 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0219290, gene-QOZ80_3BG0264550 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0337010.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_062458, gene-QYE76_062832 |
| Poaceae | Oryza coarctata | 2 | Oco05G021500, Oco06G022310 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g50220.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G107800 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G007200, Chr07G025860, Chr12G030290, Chr23G016930 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G081000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG041970, gene_TRIDC4BG007030 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G269200.1, TraesCS4B02G045000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb216450_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15906, nbis-gene-49695 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2964 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.651, evm.TU.LG21.338 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g00740 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.95 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17788 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.54 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004595 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11668 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2837 |
| Salicaceae | Populus euphratica | 2 | populus_peu07048, populus_peu21010 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641796 |
| Solanaceae | Solanum chilense | 1 | SOLCI003188200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018889 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19500_chr07_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0219 |
| Zosteraceae | Zostera marina | 1 | Zosma06g09440.v3.1 |