Basic Information
Locus ID:
BniB04g026550.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 14396349 | 14398091 | + | BniB04g026550.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.54 | 46,602.49 Da | 34.96 | 79.03 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 210 | 246 | 0.0014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 356 | 391 | 0.0027 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 18 | 87 | 4.1E-21 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 296 | 333 | 8.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 251 | 289 | 0.018 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 116 | 397 | 2.2E-51 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 412 | 8.2E-128 | IPR015943 |
| SMART | SM00320 | WD40_4 | 206 | 246 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 249 | 289 | 9.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 352 | 392 | 3.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 157 | 197 | 2.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 293 | 333 | 3.5E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 256 | 291 | 8.703868 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 300 | 335 | 11.049229 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 213 | 255 | 11.878597 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 213 | 251 | 9.177421 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 300 | 335 | 13.315579 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 164 | 199 | 10.408196 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 164 | 199 | 8.755605 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 359 | 393 | 9.338814 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 184 | 198 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 320 | 334 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 276 | 290 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 320 | 334 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 184 | 198 | 1.3E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_009112404.1 | WD-40 repeat-containing protein MSI2 [Brassica rapa] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7SFJ9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_031750 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology