Basic Information
Locus ID:
BniB04g026220.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 14219448 | 14220290 | + | BniB04g026220.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.50 | 17,340.34 Da | 32.69 | 87.45 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 78 | 147 | 1.29881E-23 | - |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 78 | 146 | 6.8E-23 | IPR020189 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 14 | 84 | 2.96E-20 | IPR008991 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 78 | 147 | 5.71E-20 | IPR012340 |
| Gene3D | G3DSA:2.30.30.30 | - | 1 | 77 | 1.1E-26 | IPR014722 |
| Gene3D | G3DSA:2.40.50.140 | - | 78 | 151 | 4.2E-26 | - |
| SMART | SM01376 | eIF_5a_2 | 77 | 146 | 1.5E-22 | IPR020189 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 16 | 145 | 3.2E-26 | IPR001884 |
| PIRSF | PIRSF003025 | Transl_init_eIF5A | 1 | 150 | 3.8E-44 | IPR001884 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69410.1 | eukaryotic elongation factor 5A-3. Encodes eIF5A-2, a putative eukaryotic translation initiation factor. There are three eIF5A coding genes in Arabidopsis: eIF5A-1/At1g13950, eIF5A-2/At1g26630 and eIF5A-3/At1g69410. | 0 |
| RefSeq | XP_006391021.1 | eukaryotic translation initiation factor 5A-3 [Eutrema salsugineum] | 0 |
| Q9C505 | Eukaryotic translation initiation factor 5A-3 OS=Arabidopsis thaliana OX=3702 GN=ELF5A-3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7QW10 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_031721 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology