Basic Information
Locus ID:
BniB04g024860.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 13420131 | 13421346 | + | BniB04g024860.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 46,479.03 Da | 42.00 | 66.15 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 240 | 283 | 3.4E-10 | IPR004146 |
| Pfam | PF03107 | C1 domain | 63 | 105 | 5.9E-9 | IPR004146 |
| Pfam | PF03107 | C1 domain | 119 | 168 | 1.0E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 293 | 343 | 1.5E-8 | IPR004146 |
| Pfam | PF03107 | C1 domain | 179 | 227 | 1.3E-7 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 32 | 87 | 6.81E-11 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 86 | 170 | 6.17E-14 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 204 | 296 | 4.19E-20 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 318 | 404 | 1.94E-6 | - |
| SMART | SM00109 | c1_12 | 67 | 110 | 1.2 | IPR002219 |
| SMART | SM00109 | c1_12 | 241 | 297 | 0.11 | IPR002219 |
| SMART | SM00249 | PHD_3 | 255 | 315 | 1.2 | IPR001965 |
| SMART | SM00249 | PHD_3 | 140 | 205 | 2.5 | IPR001965 |
| SMART | SM00109 | c1_12 | 9 | 58 | 1.1 | IPR002219 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19660.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_013606349.1 | PREDICTED: uncharacterized protein LOC106313151 [Brassica oleracea var. oleracea] | 0 |
| TrEMBL | A0A8X7QZL9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_060305 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg35663, jg8188, jg8412, jg8450, jg8451, jg8457 |
| Apiaceae | Apium graveolens | 5 | Ag10G00884, Ag1G00153, Ag1G00315, Ag8G00374, Ag8G01874 |
| Asteraceae | Flaveria trinervia | 12 | Ftri10G04197, Ftri15G15158, Ftri15G19898, Ftri1G06516 ... |
| Brassicaceae | Arabidopsis thaliana | 35 | AT1G58037.1, AT2G04680.1, AT2G19650.1, AT2G19660.1 ... |
| Brassicaceae | Eutrema salsugineum | 34 | Thhalv10001923m.g.v1.0, Thhalv10002199m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g06340.v2.2, Sp5g15690.v2.2, Sp7g01400.v2.2 ... |
| Brassicaceae | Brassica nigra | 39 | BniB01g002950.2N, BniB01g004980.2N, BniB01g026110.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 17 | Ceq01G2298, Ceq02G1953, Ceq03G0083, Ceq03G0113, Ceq03G0190 ... |
| Casuarinaceae | Casuarina glauca | 23 | Cgl01G2601, Cgl01G2602, Cgl01G2604, Cgl03G0217, Cgl03G0218 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 6 | nbisL1-mrna-3679, nbisL1-mrna-5622, nbisL1-mrna-8116 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17998 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17876 |
| Salicaceae | Populus euphratica | 4 | populus_peu26078, populus_peu26197, populus_peu26198 ... |