Basic Information
Locus ID:
BniB04g024580.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
positive regulation of bicellular tight junction assembly
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 13246388 | 13248004 | - | BniB04g024580.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.77 | 50,910.47 Da | 37.08 | 95.66 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 14 | 49 | 8.7E-8 | IPR001810 |
| SUPERFAMILY | SSF52058 | L domain-like | 150 | 404 | 5.95E-6 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 112 | 1.96E-15 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 57 | 9.5E-9 | - |
| SMART | SM00256 | fbox_2 | 18 | 59 | 6.5E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 12 | 59 | 12.279382 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48400.2 | - | 0 |
| RefSeq | XP_024015522.1 | F-box/LRR-repeat protein At1g48400 isoform X1 [Eutrema salsugineum] | 0 |
| Q56XW8 | F-box/LRR-repeat protein At1g48400 OS=Arabidopsis thaliana OX=3702 GN=At1g48400 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7P378 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_093843 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 8 | AT1G21990.1, AT1G47920.1, AT1G48390.1, AT1G48400.1 ... |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10012238m.g.v1.0, Thhalv10013291m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g29200.v2.2 |
| Brassicaceae | Brassica nigra | 18 | BniB01g014250.2N, BniB02g013580.2N, BniB02g052700.2N ... |