Basic Information
Locus ID:
BniB04g024430.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ABC transporter C family member 5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 13155042 | 13160430 | - | BniB04g024430.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.50 | 167,160.56 Da | 40.12 | 110.49 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 946 | 1240 | 1.60802E-93 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 620 | 820 | 7.65938E-104 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1263 | 1476 | 7.66707E-108 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 307 | 594 | 1.714E-91 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 948 | 1189 | 2.4E-27 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 310 | 574 | 9.3E-26 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 640 | 772 | 6.0E-18 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1282 | 1430 | 1.7E-29 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 933 | 1245 | 2.49E-50 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 295 | 602 | 9.68E-38 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1255 | 1479 | 2.61E-65 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 617 | 842 | 4.83E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1249 | 1490 | 1.4E-76 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 907 | 1246 | 2.7E-60 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 276 | 603 | 2.9E-53 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 614 | 848 | 1.8E-70 | IPR027417 |
| SMART | SM00382 | AAA_5 | 647 | 828 | 5.3E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1291 | 1476 | 5.1E-15 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 620 | 843 | 22.495773 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1265 | 1499 | 15.899836 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 948 | 1218 | 36.212166 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 309 | 586 | 34.761395 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 745 | 759 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 890 | 916 | - | - |
| Coils | Coil | Coil | 467 | 487 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_018457737.1 | PREDICTED: ABC transporter C family member 5-like isoform X1 [Raphanus sativus] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7V6S9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_031592 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology