Basic Information
Locus ID:
BniB04g023280.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 12566801 | 12567370 | + | BniB04g023280.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.66 | 21,867.04 Da | 45.48 | 78.89 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 144 | 185 | 2.49095E-16 | - |
| Pfam | PF13639 | Ring finger domain | 143 | 185 | 6.7E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 125 | 187 | 3.53E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 188 | 1.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 144 | 184 | 3.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 144 | 185 | 13.359705 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34040.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_048598124.1 | E3 ubiquitin-protein ligase Praja-1-like [Brassica napus] | 0 |
| O49500 | E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3P6A2T8 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA03T15217Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002215m.g.v1.0 |
| Brassicaceae | Brassica nigra | 24 | BniB01g016270.2N, BniB01g039860.2N, BniB01g039880.2N ... |