Basic Information
Locus ID:
BniB04g022610.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 12212803 | 12216949 | - | BniB04g022610.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 92,603.21 Da | 42.43 | 84.62 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 556 | 689 | 3.93144E-24 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 558 | 688 | 1.1E-37 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 711 | 751 | 4.6E-10 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 66 | 365 | 7.6E-6 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 517 | 767 | 4.09E-60 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 690 | 791 | 4.6E-97 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 516 | 799 | 4.6E-97 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 36 | 352 | 9.1E-6 | IPR027417 |
| SMART | SM00382 | AAA_5 | 554 | 691 | 5.5E-21 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 661 | 680 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 749 | 773 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 501 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 462 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 501 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 213 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_018456219.1 | PREDICTED: putative cell division cycle ATPase [Raphanus sativus] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7SAL3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_031437 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology