Basic Information
Locus ID:
BniB04g021610.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
hsp70-Hsp90 organizing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 11562028 | 11564571 | + | BniB04g021610.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 64,190.59 Da | 37.39 | 64.25 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17830 | STI1 domain | 133 | 186 | 1.3E-20 | IPR041243 |
| Pfam | PF13414 | TPR repeat | 387 | 428 | 6.2E-9 | - |
| Pfam | PF13181 | Tetratricopeptide repeat | 450 | 481 | 0.09 | IPR019734 |
| Pfam | PF17830 | STI1 domain | 510 | 561 | 3.0E-16 | IPR041243 |
| Pfam | PF00515 | Tetratricopeptide repeat | 70 | 103 | 7.8E-8 | IPR001440 |
| SUPERFAMILY | SSF48452 | TPR-like | 8 | 486 | 2.2E-46 | IPR011990 |
| Gene3D | G3DSA:1.10.260.100 | - | 122 | 189 | 1.7E-20 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 238 | 372 | 4.9E-40 | IPR011990 |
| Gene3D | G3DSA:1.10.260.100 | - | 499 | 569 | 3.1E-26 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1 | 116 | 2.5E-37 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 380 | 493 | 9.2E-38 | IPR011990 |
| SMART | SM00028 | tpr_5 | 70 | 103 | 7.9E-7 | IPR019734 |
| SMART | SM00028 | tpr_5 | 36 | 69 | 10.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 316 | 353 | 56.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 275 | 308 | 0.0081 | IPR019734 |
| SMART | SM00727 | CBM | 132 | 171 | 4.5E-9 | IPR006636 |
| SMART | SM00727 | CBM | 518 | 557 | 9.9E-12 | IPR006636 |
| SMART | SM00028 | tpr_5 | 2 | 35 | 2.5 | IPR019734 |
| SMART | SM00028 | tpr_5 | 380 | 413 | 0.065 | IPR019734 |
| SMART | SM00028 | tpr_5 | 414 | 447 | 1.2E-4 | IPR019734 |
| SMART | SM00028 | tpr_5 | 241 | 274 | 0.0065 | IPR019734 |
| SMART | SM00028 | tpr_5 | 448 | 481 | 2.3E-5 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 70 | 103 | 12.6559 | IPR019734 |
| ProSiteProfiles | PS50293 | TPR repeat region circular profile. | 70 | 103 | 9.563738 | - |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 241 | 274 | 8.9389 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 414 | 447 | 8.4374 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 380 | 413 | 8.9389 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 448 | 481 | 10.7384 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 2 | 35 | 8.4964 | IPR019734 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 130 | - | - |
| Coils | Coil | Coil | 228 | 248 | - | - |
| Coils | Coil | Coil | 352 | 372 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62740.1 | stress-inducible protein, putative. | 0 |
| RefSeq | XP_009113054.1 | hsp70-Hsp90 organizing protein 2 [Brassica rapa] | 0 |
| Q5XEP2 | Hsp70-Hsp90 organizing protein 2 OS=Arabidopsis thaliana OX=3702 GN=HOP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7SAU0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_031354 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23371, jg37233 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1932 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004749 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g098030, BVRB_6g145050 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24337, Sbi_jg8171 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11847 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001516 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl56891 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008001, gene:ENSEOMG00000020965 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0000580, CQ.Regalona.r1.5BG0000590 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30142990 |
| Apiaceae | Apium graveolens | 3 | Ag6G00625, Ag6G01745, Ag6G02616 |
| Arecaceae | Cocos nucifera | 2 | COCNU_10G004330, scaffold005462G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708511 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.277.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G30651, Ftri16G04267 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G12270.1, AT1G62740.1, AT4G12400.2 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10007205m.g.v1.0, Thhalv10023385m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g10890.v2.2, Sp2g01900.v2.2, Sp6g05150.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB02g007040.2N, BniB02g007050.2N, BniB02g010350.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0077 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0083 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g08510, gene.Cymno03g07710 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0549s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g06620 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1304, evm.TU.LG10.1243 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004214 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G08978, Lb8G36485 |
| Poaceae | Echinochloa crus-galli | 6 | AH07.2799, AH09.1730, BH07.2609, BH09.1910, CH07.2674 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0139090, gene-QOZ80_2BG0194740 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0184620.1, HORVU.MOREX.r3.6HG0599080.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_024019, gene-QYE76_045246 |
| Poaceae | Oryza coarctata | 4 | Oco03G016570, Oco04G017340, Oco07G011740, Oco08G011420 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g43020.1, LOC_Os04g45480.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G211500, gene-BS78_06G172500 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0201606, Pt_Chr0204042, Pt_Chr0207518, Pt_Chr0301875 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr06G006380, Chr09G024750, Chr13G006270, Chr15G008090 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G663300, Tel6E01G452300 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG055670, gene_TRIDC2BG058540 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS2A02G386800.1, TraesCS2B02G404400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb075450_P002, Zm00001eb186100_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-22451, nbis-gene-37197, nbis-gene-9339 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g13997, Zma_g16761, Zma_g20136 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.441, evm.TU.LG10.189, evm.TU.LG17.185 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g19450 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.312, evm.TU.Scaffold_16_RagTag.294 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-18065, nbisL1-mrna-22535, nbisL1-mrna-31001 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-5215, nbisL1-mrna-7515 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20233, nbisL1-mrna-8407 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000007l.181, evm.TU.utg000022l.317 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014231, Maker00018599 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16124, nbisL1-mrna-3456 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10778, nbisL1-mrna-6583 |
| Salicaceae | Populus euphratica | 3 | populus_peu03416, populus_peu03417, populus_peu34256 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609834, gene-LOC132635070 |
| Solanaceae | Solanum chilense | 1 | SOLCI005886600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028487 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13614_chr05_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G0115 |
| Zosteraceae | Zostera marina | 1 | Zosma01g13100.v3.1 |