Basic Information
Locus ID:
BniB04g021360.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
mitochondrial transcription termination factor family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 11360731 | 11362029 | - | BniB04g021360.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.57 | 48,652.49 Da | 39.37 | 98.06 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02536 | mTERF | 68 | 404 | 4.0E-113 | IPR003690 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 271 | 415 | 6.6E-36 | IPR038538 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 35 | 270 | 1.7E-22 | IPR038538 |
| SMART | SM00733 | mt_12 | 214 | 244 | 130.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 319 | 350 | 0.0015 | IPR003690 |
| SMART | SM00733 | mt_12 | 82 | 113 | 3.6 | IPR003690 |
| SMART | SM00733 | mt_12 | 351 | 385 | 0.019 | IPR003690 |
| SMART | SM00733 | mt_12 | 284 | 314 | 2.6E-4 | IPR003690 |
| SMART | SM00733 | mt_12 | 182 | 210 | 1900.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 249 | 279 | 0.012 | IPR003690 |
| SMART | SM00733 | mt_12 | 118 | 148 | 1100.0 | IPR003690 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62120.1 | Mitochondrial transcription termination factor family protein. | 0 |
| RefSeq | XP_013611134.1 | PREDICTED: uncharacterized protein LOC106317877 [Brassica oleracea var. oleracea] | 0 |
| TrEMBL | A0A8X7S7X1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_031329 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 13 | AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 14 | Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... |
| Brassicaceae | Brassica nigra | 12 | BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... |