Basic Information
Locus ID:
BniB04g021210.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 11193120 | 11197949 | - | BniB04g021210.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 90,163.54 Da | 31.89 | 92.23 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 526 | 780 | 5.14817E-89 | - |
| Pfam | PF00069 | Protein kinase domain | 510 | 776 | 2.6E-46 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 121 | 180 | 3.3E-7 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 494 | 790 | 2.16E-77 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 3 | 256 | 1.58E-41 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 63 | 271 | 4.1E-37 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 584 | 796 | 1.3E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 479 | 583 | 5.6E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 62 | 9.9E-16 | IPR032675 |
| SMART | SM00220 | serkin_6 | 508 | 782 | 1.8E-32 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 508 | 782 | 38.887592 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 146 | 168 | 8.019983 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 628 | 640 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 514 | 536 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 794 | 816 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49760.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_048595742.1 | leucine-rich repeat receptor protein kinase HPCA1-like [Brassica napus] | 0 |
| Q8GZ99 | Leucine-rich repeat receptor protein kinase HPCA1 OS=Arabidopsis thaliana OX=3702 GN=HPCA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7SAE9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_031313 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology