halophFGD

Basic Information

Locus ID: BniB04g021110.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: mitochondrial transcription termination factor family protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B4	11072888	11074875	-	BniB04g021110.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.32	47,625.67 Da	42.81	90.71	-0.24

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02536	mTERF	82	158	1.2E-16	IPR003690
Pfam	PF02536	mTERF	165	266	9.2E-17	IPR003690
Pfam	PF02536	mTERF	246	362	5.5E-39	IPR003690
Gene3D	G3DSA:1.25.70.10	Transcription termination factor 3, mitochondrial	175	376	4.9E-34	IPR038538
SMART	SM00733	mt_12	96	127	0.15	IPR003690
SMART	SM00733	mt_12	277	308	0.0014	IPR003690
SMART	SM00733	mt_12	242	272	9.0E-5	IPR003690
SMART	SM00733	mt_12	309	343	7.0	IPR003690
SMART	SM00733	mt_12	207	237	32.0	IPR003690

Gene Ontology

Biological Process:

GO:0006355 (regulation of DNA-templated transcription)

Molecular Function:

GO:0003690 (double-stranded DNA binding)

KEGG Pathway

KO Term:

K15032 (NOT_FOUND)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G61990.1	Mitochondrial transcription termination factor family protein.
RefSeq	XP_022565366.1	uncharacterized protein LOC106357124 isoform X1 [Brassica napus]
TrEMBL	A0A078G3G9	(rape) hypothetical protein OS=Brassica napus OX=3708 GN=BnaC09g13860D PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	13	AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... AT1G61990.1, AT1G62010.1, AT1G62085.1, AT1G62110.1, AT1G62120.1, AT1G62150.1, AT1G62490.1, AT3G46950.1, AT5G23930.1
Brassicaceae	Eutrema salsugineum	24	Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... Thhalv10022427m.g.v1.0, Thhalv10023445m.g.v1.0, Thhalv10023447m.g.v1.0, Thhalv10023457m.g.v1.0, Thhalv10023461m.g.v1.0, Thhalv10023467m.g.v1.0, Thhalv10023470m.g.v1.0, Thhalv10023472m.g.v1.0, Thhalv10023505m.g.v1.0, Thhalv10023801m.g.v1.0, Thhalv10023838m.g.v1.0, Thhalv10023868m.g.v1.0, Thhalv10023911m.g.v1.0, Thhalv10023915m.g.v1.0, Thhalv10024025m.g.v1.0, Thhalv10024039m.g.v1.0, Thhalv10024041m.g.v1.0, Thhalv10024076m.g.v1.0, Thhalv10024090m.g.v1.0, Thhalv10024124m.g.v1.0, Thhalv10024133m.g.v1.0, Thhalv10024167m.g.v1.0
Brassicaceae	Schrenkiella parvula	14	Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... Sp2g02560.v2.2, Sp2g02570.v2.2, Sp2g02580.v2.2, Sp2g02590.v2.2, Sp2g02600.v2.2, Sp2g02610.v2.2, Sp2g23340.v2.2, Sp3g04430.v2.2, Sp3g28660.v2.2, Sp5g14790.v2.2, Sp7g03520.v2.2
Brassicaceae	Brassica nigra	12	BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... BniB02g058870.2N, BniB02g059080.2N, BniB02g059110.2N, BniB04g019510.2N, BniB04g021090.2N, BniB04g021110.2N, BniB04g021360.2N, BniB07g047770.2N, BniB08g059690.2N