halophFGD

Basic Information

Locus ID: BniB04g021090.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: mitochondrial transcription termination factor family protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B4	11065242	11070585	+	BniB04g021090.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.34	117,493.07 Da	38.44	95.88	-0.05

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02536	mTERF	666	1009	5.8E-113	IPR003690
Pfam	PF02536	mTERF	1	87	6.1E-12	IPR003690
Pfam	PF02536	mTERF	92	179	3.5E-31	IPR003690
Pfam	PF02536	mTERF	468	578	3.5E-39	IPR003690
Pfam	PF02536	mTERF	265	481	3.2E-56	IPR003690
Gene3D	G3DSA:1.25.70.10	Transcription termination factor 3, mitochondrial	344	589	4.3E-40	IPR038538
Gene3D	G3DSA:1.25.70.10	Transcription termination factor 3, mitochondrial	1	189	7.9E-30	IPR038538
Gene3D	G3DSA:1.25.70.10	Transcription termination factor 3, mitochondrial	800	1020	3.4E-44	IPR038538
SMART	SM00733	mt_12	855	885	0.31	IPR003690
SMART	SM00733	mt_12	51	81	0.98	IPR003690
SMART	SM00733	mt_12	94	125	2.3E-5	IPR003690
SMART	SM00733	mt_12	126	160	0.085	IPR003690
SMART	SM00733	mt_12	525	559	0.13	IPR003690
SMART	SM00733	mt_12	820	850	12.0	IPR003690
SMART	SM00733	mt_12	279	310	0.28	IPR003690
SMART	SM00733	mt_12	458	488	2.3E-4	IPR003690
SMART	SM00733	mt_12	717	749	160.0	IPR003690
SMART	SM00733	mt_12	680	712	0.031	IPR003690
SMART	SM00733	mt_12	925	956	8.4E-5	IPR003690
SMART	SM00733	mt_12	752	782	2700.0	IPR003690
SMART	SM00733	mt_12	388	417	1700.0	IPR003690
SMART	SM00733	mt_12	890	920	0.0031	IPR003690
SMART	SM00733	mt_12	423	453	3.5	IPR003690
SMART	SM00733	mt_12	493	524	5.3E-4	IPR003690
SMART	SM00733	mt_12	957	991	0.044	IPR003690
SMART	SM00733	mt_12	315	347	460.0	IPR003690

Gene Ontology

Biological Process:

GO:0006355 (regulation of DNA-templated transcription)

Molecular Function:

GO:0003690 (double-stranded DNA binding)

KEGG Pathway

KO Term:

K15032 (NOT_FOUND)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G61990.1	Mitochondrial transcription termination factor family protein.
RefSeq	XP_013607370.1	PREDICTED: uncharacterized protein LOC106313973 [Brassica oleracea var. oleracea]
TrEMBL	A0A8S1ZLM7	Genome assembly, chromosome: 2 OS=Arabidopsis arenosa OX=38785 GN=AARE701A_LOCUS4192 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	13	AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... AT1G61990.1, AT1G62010.1, AT1G62085.1, AT1G62110.1, AT1G62120.1, AT1G62150.1, AT1G62490.1, AT3G46950.1, AT5G23930.1
Brassicaceae	Eutrema salsugineum	24	Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... Thhalv10022427m.g.v1.0, Thhalv10023445m.g.v1.0, Thhalv10023447m.g.v1.0, Thhalv10023457m.g.v1.0, Thhalv10023461m.g.v1.0, Thhalv10023467m.g.v1.0, Thhalv10023470m.g.v1.0, Thhalv10023472m.g.v1.0, Thhalv10023505m.g.v1.0, Thhalv10023801m.g.v1.0, Thhalv10023838m.g.v1.0, Thhalv10023868m.g.v1.0, Thhalv10023911m.g.v1.0, Thhalv10023915m.g.v1.0, Thhalv10024025m.g.v1.0, Thhalv10024039m.g.v1.0, Thhalv10024041m.g.v1.0, Thhalv10024076m.g.v1.0, Thhalv10024090m.g.v1.0, Thhalv10024124m.g.v1.0, Thhalv10024133m.g.v1.0, Thhalv10024167m.g.v1.0
Brassicaceae	Schrenkiella parvula	14	Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... Sp2g02560.v2.2, Sp2g02570.v2.2, Sp2g02580.v2.2, Sp2g02590.v2.2, Sp2g02600.v2.2, Sp2g02610.v2.2, Sp2g23340.v2.2, Sp3g04430.v2.2, Sp3g28660.v2.2, Sp5g14790.v2.2, Sp7g03520.v2.2
Brassicaceae	Brassica nigra	12	BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... BniB02g058870.2N, BniB02g059080.2N, BniB02g059110.2N, BniB04g019510.2N, BniB04g021090.2N, BniB04g021110.2N, BniB04g021360.2N, BniB07g047770.2N, BniB08g059690.2N