Basic Information
Locus ID:
BniB04g020590.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
DNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 10698155 | 10704703 | - | BniB04g020590.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 129,925.98 Da | 46.27 | 79.22 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 455 | 654 | 1.18567E-101 | - |
| CDD | cd18794 | SF2_C_RecQ | 655 | 787 | 5.55331E-74 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 671 | 777 | 3.3E-17 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 466 | 634 | 2.2E-18 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 789 | 868 | 1.6E-14 | IPR032284 |
| Pfam | PF00570 | HRDC domain | 1028 | 1095 | 1.1E-15 | IPR002121 |
| Pfam | PF09382 | RQC domain | 877 | 990 | 3.7E-20 | IPR018982 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1028 | 1099 | 1.55E-13 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 653 | 920 | 1.13E-57 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 439 | 796 | 1.47E-43 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 428 | 654 | 2.9E-90 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 655 | 871 | 2.9E-65 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1020 | 1106 | 1.2E-21 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 876 | 986 | 2.3E-19 | IPR036388 |
| SMART | SM00487 | ultradead3 | 460 | 663 | 1.0E-30 | IPR014001 |
| SMART | SM00956 | RQC_2 | 878 | 989 | 6.1E-28 | IPR018982 |
| SMART | SM00490 | helicmild6 | 697 | 778 | 1.5E-27 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 456 | 929 | 3.9E-164 | IPR004589 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 687 | 728 | 8.624434 | IPR001763 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1023 | 1105 | 18.28475 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 672 | 824 | 20.522503 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 472 | 647 | 23.404541 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 586 | 595 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1103 | 1159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 192 | - | - |
| Coils | Coil | Coil | 323 | 353 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_018452745.1 | PREDICTED: ATP-dependent DNA helicase Q-like 4B [Raphanus sativus] | 0 |
| Q9FT70 | ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana OX=3702 GN=RECQL4B PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7V545 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_031245 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology