halophFGD

Basic Information

Locus ID: BniB04g020250.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: protein modification by small protein conjugation or removal

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B4	10496239	10497262	+	BniB04g020250.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.17	28,841.03 Da	38.24	90.92	-0.39

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Coils	Coil	Coil	153	180	-	-

KEGG Pathway

KO Term:

K00276 (primary-amine oxidase [EC:1.4.3.21])

Pathway:

ko00260 (Glycine, serine and threonine metabolism) map00260 (Glycine, serine and threonine metabolism) ko00350 (Tyrosine metabolism) map00350 (Tyrosine metabolism) ko00360 (Phenylalanine metabolism) map00360 (Phenylalanine metabolism) ko00410 (beta-Alanine metabolism) map00410 (beta-Alanine metabolism) ko00950 (Isoquinoline alkaloid biosynthesis) map00950 (Isoquinoline alkaloid biosynthesis) ko00960 (Tropane, piperidine and pyridine alkaloid biosynthesis) map00960 (Tropane, piperidine and pyridine alkaloid biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Reaction:

R02382 (Tyramine + H2O + Oxygen <=> 4-Hydroxyphenylacetaldehyde + Ammonia + Hydrogen peroxide) R02529 (Aminoacetone + H2O + Oxygen <=> Methylglyoxal + Ammonia + Hydrogen peroxide) R02613 (Phenethylamine + Oxygen + H2O <=> Phenylacetaldehyde + Ammonia + Hydrogen peroxide) R03139 (1,3-Diaminopropane + Oxygen + H2O <=> 3-Aminopropanal + Ammonia + Hydrogen peroxide) R04027 (N-Methylputrescine + Oxygen + H+ <=> 1-Methylpyrrolinium + Hydrogen peroxide + Ammonia) R04300 (Dopamine + H2O + Oxygen <=> 3,4-Dihydroxyphenylacetaldehyde + Ammonia + Hydrogen peroxide) R06154 (Methylamine + Oxygen + H2O <=> Formaldehyde + Ammonia + Hydrogen peroxide) R06740 (Cadaverine + H2O + Oxygen <=> 5-Aminopentanal + Ammonia + Hydrogen peroxide)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G42470.1	TRAF-like family protein.
RefSeq	XP_018467127.1	PREDICTED: MATH domain and coiled-coil domain-containing protein At2g42470-like, partial [Raphanus sativus]
Swiss-Prot	P0DKG5	MATH domain and coiled-coil domain-containing protein At2g42470 OS=Arabidopsis thaliana OX=3702 GN=At2g42470 PE=4 SV=1
TrEMBL	A0A3P6C393	MATH domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC4T25117H PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000020776, gene:ENSEOMG00000042009
Anacardiaceae	Pistacia vera	2	pistato.v30053150, pistato.v30053760
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.1844.V1.1, AsparagusV1_05.3047.V1.1 ... AsparagusV1_09.696.V1.1
Brassicaceae	Arabidopsis thaliana	38	AT1G31370.1, AT1G31380.1, AT1G31390.1, AT1G31400.1 ... AT2G01790.1, AT2G05400.1, AT2G05410.1, AT2G05420.1, AT2G05430.1, AT2G42460.1, AT2G42470.1, AT2G42480.1, AT3G27040.1, AT3G29580.1, AT3G44790.1, AT3G44800.1, AT3G44805.1, AT3G58200.1, AT3G58210.1, AT3G58220.2, AT3G58230.1, AT3G58240.1, AT3G58250.1, AT3G58260.1, AT3G58270.1, AT3G58280.1, AT3G58290.1, AT3G58320.1, AT3G58330.1, AT3G58340.1, AT3G58350.1, AT3G58360.1, AT3G58370.1, AT3G58380.1, AT3G58400.1, AT3G58410.1, AT3G58430.1, AT3G58440.1
Brassicaceae	Eutrema salsugineum	38	Thhalv10005920m.g.v1.0, Thhalv10006412m.g.v1.0 ... Thhalv10006427m.g.v1.0, Thhalv10006437m.g.v1.0, Thhalv10006449m.g.v1.0, Thhalv10006467m.g.v1.0, Thhalv10006470m.g.v1.0, Thhalv10006486m.g.v1.0, Thhalv10008254m.g.v1.0, Thhalv10010958m.g.v1.0, Thhalv10011795m.g.v1.0, Thhalv10011971m.g.v1.0, Thhalv10011981m.g.v1.0, Thhalv10011998m.g.v1.0, Thhalv10012015m.g.v1.0, Thhalv10012031m.g.v1.0, Thhalv10012069m.g.v1.0, Thhalv10012071m.g.v1.0, Thhalv10012142m.g.v1.0, Thhalv10012179m.g.v1.0, Thhalv10016883m.g.v1.0, Thhalv10017071m.g.v1.0, Thhalv10017566m.g.v1.0, Thhalv10023572m.g.v1.0, Thhalv10023616m.g.v1.0, Thhalv10023897m.g.v1.0, Thhalv10023954m.g.v1.0, Thhalv10023996m.g.v1.0, Thhalv10024005m.g.v1.0, Thhalv10024153m.g.v1.0, Thhalv10026867m.g.v1.0, Thhalv10028053m.g.v1.0, Thhalv10028058m.g.v1.0, Thhalv10028109m.g.v1.0, Thhalv10028307m.g.v1.0, Thhalv10028318m.g.v1.0, Thhalv10029184m.g.v1.0, Thhalv10029219m.g.v1.0
Brassicaceae	Schrenkiella parvula	18	Sp1g34680.v2.2, Sp2g04170.v2.2, Sp2g04180.v2.2 ... Sp4g24600.v2.2, Sp4g24610.v2.2, Sp5g04440.v2.2, Sp5g04450.v2.2, Sp5g04453.v2.2, Sp5g04457.v2.2, Sp5g04460.v2.2, Sp5g04480.v2.2, Sp5g04500.v2.2, Sp5g04510.v2.2, Sp5g21580.v2.2, Sp6g09200.v2.2, Sp6g09210.v2.2, Sp7g05400.v2.2, SpUn0053_0040.v2.2
Brassicaceae	Brassica nigra	59	BniB01g003420.2N, BniB01g003430.2N, BniB01g003440.2N ... BniB01g003450.2N, BniB01g025850.2N, BniB02g000230.2N, BniB02g001350.2N, BniB02g040450.2N, BniB02g049390.2N, BniB02g051720.2N, BniB03g001240.2N, BniB03g010160.2N, BniB03g011950.2N, BniB03g051100.2N, BniB03g052390.2N, BniB03g055960.2N, BniB04g020230.2N, BniB04g020250.2N, BniB04g020290.2N, BniB04g020300.2N, BniB04g020330.2N, BniB06g001540.2N, BniB06g054900.2N, BniB06g054910.2N, BniB06g054920.2N, BniB06g054930.2N, BniB06g054940.2N, BniB06g054960.2N, BniB06g054970.2N, BniB06g054980.2N, BniB06g054990.2N, BniB06g055000.2N, BniB06g055010.2N, BniB06g055020.2N, BniB06g055030.2N, BniB06g055040.2N, BniB06g055050.2N, BniB06g055060.2N, BniB06g055080.2N, BniB06g055090.2N, BniB06g055100.2N, BniB06g055120.2N, BniB06g055130.2N, BniB06g055140.2N, BniB06g055150.2N, BniB06g063480.2N, BniB06g063490.2N, BniB06g063500.2N, BniB06g063510.2N, BniB06g063530.2N, BniB06g063540.2N, BniB07g008670.2N, BniB07g045970.2N, BniB07g046280.2N, BniB07g046490.2N, BniB08g027490.2N, BniB08g072890.2N, BniB08g072950.2N, BniB08g073000.2N
Casuarinaceae	Casuarina glauca	1	Cgl05G1118
Plantaginaceae	Plantago ovata	1	Pov_00021253
Poaceae	Zoysia japonica	1	nbis-gene-36802
Salicaceae	Populus euphratica	1	populus_peu12364
Solanaceae	Solanum pennellii	1	gene-LOC107019779
Zosteraceae	Zostera marina	6	Zosma01g13790.v3.1, Zosma02g07570.v3.1, Zosma03g09470.v3.1 ... Zosma03g10120.v3.1, Zosma05g15530.v3.1, Zosma05g17230.v3.1