Basic Information
Locus ID:
BniB04g019510.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
mitochondrial transcription termination factor family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 10056558 | 10057997 | + | BniB04g019510.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.43 | 48,024.43 Da | 41.23 | 94.22 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02536 | mTERF | 293 | 400 | 1.2E-36 | IPR003690 |
| Pfam | PF02536 | mTERF | 85 | 298 | 2.6E-38 | IPR003690 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 223 | 412 | 3.0E-34 | IPR038538 |
| Gene3D | G3DSA:1.25.70.10 | Transcription termination factor 3, mitochondrial | 54 | 190 | 4.7E-13 | IPR038538 |
| SMART | SM00733 | mt_12 | 348 | 382 | 0.048 | IPR003690 |
| SMART | SM00733 | mt_12 | 132 | 164 | 410.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 316 | 347 | 1.7E-4 | IPR003690 |
| SMART | SM00733 | mt_12 | 99 | 127 | 32.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 246 | 276 | 230.0 | IPR003690 |
| SMART | SM00733 | mt_12 | 281 | 311 | 0.0037 | IPR003690 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61970.1 | Mitochondrial transcription termination factor family protein. | 0 |
| RefSeq | XP_018454291.1 | PREDICTED: uncharacterized protein LOC108825491 [Raphanus sativus] | 0 |
| TrEMBL | A0A6J0L3Y6 | uncharacterized protein LOC108825491 OS=Raphanus sativus OX=3726 GN=LOC108825491 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 13 | AT1G56380.2, AT1G61960.1, AT1G61970.1, AT1G61980.1 ... |
| Brassicaceae | Eutrema salsugineum | 24 | Thhalv10004187m.g.v1.0, Thhalv10019750m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 14 | Sp2g02100.v2.2, Sp2g02110.v2.2, Sp2g02550.v2.2 ... |
| Brassicaceae | Brassica nigra | 12 | BniB01g058040.2N, BniB02g010390.2N, BniB02g058860.2N ... |