Basic Information
Locus ID:
BniB04g018910.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 9615866 | 9618055 | - | BniB04g018910.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 47,635.53 Da | 43.97 | 80.55 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 83 | 396 | 5.5E-88 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 45 | 428 | 1.57E-124 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 35 | 427 | 6.2E-117 | IPR012334 |
| SMART | SM00710 | pbh1 | 260 | 280 | 6500.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 237 | 258 | 11.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 319 | 340 | 2100.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 210 | 236 | 170.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 290 | 311 | 0.33 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 267 | 280 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56710.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_009113378.2 | polygalacturonase At1g48100 [Brassica rapa] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7SAP3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_031138 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology