Basic Information
Locus ID:
BniB04g018820.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 9588986 | 9591201 | + | BniB04g018820.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 66,137.08 Da | 37.28 | 95.19 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 250 | 310 | 7.9E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 23 | 70 | 8.7E-9 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 155 | 176 | 1.0 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 394 | 452 | 5.5E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 510 | 537 | 1.3 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 74 | 368 | 2.2E-52 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 287 | 550 | 6.8E-45 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 313 | 486 | 7.8E-41 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 188 | 312 | 8.7E-33 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 22 | 187 | 2.0E-33 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 487 | 564 | 2.5E-16 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 248 | 274 | 14.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 508 | 523 | 530.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 152 | 181 | 5.1 | - |
| SMART | SM00369 | LRR_typ_2 | 508 | 532 | 32.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 176 | 200 | 7.5 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 297 | 320 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 128 | 152 | 19.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 248 | 271 | 150.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 200 | 221 | 680.0 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04220.1 | receptor like protein 46. | 0 |
| RefSeq | XP_033134193.1 | receptor-like protein 46 [Brassica rapa] | 0 |
| F4JGB6 | Receptor-like protein 46 OS=Arabidopsis thaliana OX=3702 GN=RLP46 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8X7SA46 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_031133 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021381 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056200 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032386 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0017740 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30085600, pistato.v30085610, pistato.v30085720 ... |
| Apiaceae | Apium graveolens | 5 | Ag1G01409, Ag1G01533, Ag1G01534, Ag3G00393, Ag9G01364 |
| Arecaceae | Cocos nucifera | 1 | scaffold001583G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718375 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G03062, Ftri16G18592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027707m.g.v1.0, Thhalv10027711m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02900.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018820.2N, BniB04g018840.2N, BniB07g033940.2N |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2115, evm.TU.LG15.1016 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.19 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10341 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20621 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17663 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002965 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24363 |
| Salicaceae | Populus euphratica | 1 | populus_peu04482 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607114 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8519 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1643 |