Basic Information
Locus ID:
BniB04g018590.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zn-finger in Ran binding protein and others
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 9492338 | 9495659 | + | BniB04g018590.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 92,734.82 Da | 64.17 | 50.89 | -1.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 371 | 399 | 3.2E-9 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 405 | 432 | 1.5E-4 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 364 | 400 | 1.44E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 363 | 401 | 6.0E-17 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 402 | 433 | 6.5E-8 | - |
| SMART | SM00547 | zf_4 | 406 | 430 | 0.06 | IPR001876 |
| SMART | SM00547 | zf_4 | 373 | 397 | 2.1E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 371 | 400 | 10.116323 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 404 | 433 | 9.325869 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 408 | 427 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 375 | 394 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 808 | 831 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 831 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 512 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 742 | 788 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 622 | 637 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 131 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_018457990.1 | PREDICTED: uncharacterized protein LOC108828724 [Raphanus sativus] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7SA36 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_031109 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology