Basic Information
Locus ID:
BniB04g018370.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 9357277 | 9359773 | - | BniB04g018370.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 73,583.22 Da | 43.06 | 106.28 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 288 | 330 | 5.82885E-27 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 408 | 447 | 4.0E-11 | IPR000225 |
| Pfam | PF04564 | U-box domain | 285 | 354 | 2.5E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 492 | 529 | 8.0E-6 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 375 | 654 | 3.6E-47 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 284 | 358 | 2.24E-29 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 284 | 357 | 3.0E-31 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 45 | 158 | 1.7E-7 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 358 | 657 | 2.2E-53 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 287 | 350 | 4.1E-32 | IPR003613 |
| SMART | SM00185 | arm_5 | 408 | 448 | 6.6E-7 | IPR000225 |
| SMART | SM00185 | arm_5 | 531 | 571 | 0.33 | IPR000225 |
| SMART | SM00185 | arm_5 | 490 | 530 | 0.025 | IPR000225 |
| SMART | SM00185 | arm_5 | 449 | 489 | 120.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 572 | 612 | 53.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 501 | 543 | 9.1874 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 460 | 502 | 9.7824 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 283 | 357 | 43.283775 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 419 | 461 | 14.5424 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42340.1 | Plant U-Box 15. | 0 |
| RefSeq | XP_013640208.1 | U-box domain-containing protein 15 [Brassica napus] | 0 |
| Q681N2 | U-box domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=PUB15 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7V513 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_031083 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg28936, jg6053 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8357 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035914 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg39867 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14462 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014228 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl12349, Sgl12350, Sgl17631 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019174, gene:ENSEOMG00000032697 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0001260 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30048370, pistato.v30108840 |
| Apiaceae | Apium graveolens | 1 | Ag11G03551 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G005270 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701164, gene-LOC103723151 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G27100, Ftri5G04838 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G42340.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003163m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g08220.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g018370.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0744, Ceq07G1828 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0840, Cgl07G1994 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g07720 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.83, evm.TU.LG08.419 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007303, Pov_00037443 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G21251 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.3032, AH08.1860, BH06.2817, BH08.1941, CH08.2129 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0551340, gene-QOZ80_6BG0504920 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0691600.1, HORVU.MOREX.r3.7HG0751570.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_031045 |
| Poaceae | Oryza coarctata | 4 | Oco11G017620, Oco12G017860, Oco15G012460, Oco16G010130 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g51130.1, LOC_Os08g37570.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G169900, gene-BS78_10G262800 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0207170, Pt_Chr0401843, Pt_Chr0401844, Pt_Chr0403291 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr0G007310, Chr10G022430, Chr11G000020, Chr20G003770 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G497300, Tel7E01G956700 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC7AG040490, gene_TRIDC7AG076340 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G293900.1, TraesCS7A02G549700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb033520_P001, Zm00001eb228550_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17275, nbis-gene-9525 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g24264, Zma_g31170 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG01.298 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g14920 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7648 |
| Salicaceae | Populus euphratica | 3 | populus_peu08432, populus_peu33118, populus_peu36919 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628207 |
| Solanaceae | Solanum chilense | 2 | SOLCI004761100, SOLCI005554800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107005669, gene-LOC107017315 |
| Zosteraceae | Zostera marina | 1 | Zosma05g23650.v3.1 |