Basic Information
Locus ID:
BniB04g017400.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Transducin family protein WD-40 repeat family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 8802149 | 8804263 | - | BniB04g017400.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 59,613.86 Da | 41.37 | 86.30 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 214 | 510 | 4.63489E-59 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 432 | 468 | 0.0024 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 473 | 510 | 4.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 258 | 294 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 301 | 332 | 0.078 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 213 | 249 | 1.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 208 | 510 | 2.18E-65 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 206 | 473 | 2.2E-59 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 474 | 520 | 3.5E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 342 | 382 | 16.0 | IPR001680 |
| SMART | SM00667 | Lish | 13 | 45 | 0.0092 | IPR006594 |
| SMART | SM00668 | ctlh | 46 | 103 | 9.4E-5 | IPR006595 |
| SMART | SM00320 | WD40_4 | 255 | 294 | 2.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 384 | 422 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 426 | 468 | 0.048 | IPR001680 |
| SMART | SM00320 | WD40_4 | 210 | 249 | 3.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 471 | 511 | 1.5E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 297 | 340 | 0.11 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 478 | 510 | 11.708317 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 13 | 45 | 9.064186 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 46 | 103 | 9.856319 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 262 | 298 | 10.706503 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 217 | 250 | 9.678328 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 217 | 258 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 478 | 510 | 14.151034 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 262 | 303 | 13.816853 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 451 | 477 | 10.074014 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 455 | 469 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 236 | 250 | 9.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 455 | 469 | 9.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 498 | 512 | 9.1E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_022570943.2 | WD repeat-containing protein WDS homolog [Brassica napus] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7V4W1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_030990 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology