Basic Information
Locus ID:
BniB04g016890.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
MAP kinase kinase kinase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 8493161 | 8493992 | + | BniB04g016890.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.28 | 27,622.61 Da | 60.01 | 73.51 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 111 | 244 | 4.4E-23 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 23 | 245 | 4.99E-46 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 106 | 248 | 2.8E-31 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 9 | 105 | 1.3E-7 | - |
| SMART | SM00220 | serkin_6 | 24 | 245 | 2.8E-30 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 24 | 245 | 23.340193 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 114 | 126 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40560.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_013632686.1 | PREDICTED: mitogen-activated protein kinase kinase kinase ANP1-like [Brassica oleracea var. oleracea] | 0 |
| Q9C5H5 | Mitogen-activated protein kinase kinase kinase 5 OS=Arabidopsis thaliana OX=3702 GN=MAPKKK5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7V3P0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_030931 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G40500.1, AT2G40560.1 |
| Brassicaceae | Eutrema salsugineum | 9 | Thhalv10012219m.g.v1.0, Thhalv10017514m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g04290.v2.2, Sp2g09540.v2.2 |
| Brassicaceae | Brassica nigra | 15 | BniB01g004780.2N, BniB02g062010.2N, BniB03g062440.2N ... |