Basic Information
Locus ID:
BniB04g015560.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 7676518 | 7678221 | - | BniB04g015560.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 61,982.17 Da | 43.89 | 70.02 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 388 | 465 | 4.78011E-48 | - |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 395 | 440 | 9.5E-11 | IPR011598 |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 73 | 259 | 1.6E-52 | IPR025610 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 393 | 459 | 2.22E-18 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 390 | 465 | 4.6E-17 | IPR036638 |
| SMART | SM00353 | finulus | 397 | 446 | 1.2E-16 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 391 | 440 | 17.447117 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 403 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 484 | - | - |
| Coils | Coil | Coil | 430 | 464 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46760.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. | 0 |
| RefSeq | XP_013743293.1 | transcription factor MYC3-like [Brassica napus] | 0 |
| Q9FIP9 | Transcription factor MYC3 OS=Arabidopsis thaliana OX=3702 GN=MYC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7SB74 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_030821 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology