Basic Information
Locus ID:
BniB04g015480.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 7623201 | 7624430 | - | BniB04g015480.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 45,128.97 Da | 48.65 | 80.12 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 233 | 309 | 4.70886E-44 | - |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 240 | 285 | 1.4E-9 | IPR011598 |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 22 | 117 | 2.0E-28 | IPR025610 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 239 | 306 | 1.44E-16 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 234 | 313 | 8.8E-15 | IPR036638 |
| SMART | SM00353 | finulus | 242 | 291 | 2.1E-13 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 236 | 285 | 16.278553 | IPR011598 |
| Coils | Coil | Coil | 282 | 309 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46830.1 | NACL-inducible gene 1. Calcium-binding transcription factor involved in salt stress signaling. | 0 |
| RefSeq | XP_013614723.1 | PREDICTED: transcription factor bHLH28-like [Brassica oleracea var. oleracea] | 0 |
| Q9LUK7 | Transcription factor bHLH28 OS=Arabidopsis thaliana OX=3702 GN=BHLH28 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7V740 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_030817 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology