Basic Information
Locus ID:
BniB04g015470.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 7602080 | 7603615 | - | BniB04g015470.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 56,733.72 Da | 56.88 | 77.67 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 335 | 411 | 3.7267E-41 | - |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 342 | 387 | 1.7E-9 | IPR011598 |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 39 | 220 | 2.1E-48 | IPR025610 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 341 | 408 | 2.88E-16 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 336 | 415 | 5.6E-15 | IPR036638 |
| SMART | SM00353 | finulus | 344 | 393 | 5.8E-14 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 338 | 387 | 16.443676 | IPR011598 |
| Coils | Coil | Coil | 384 | 411 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46830.1 | NACL-inducible gene 1. Calcium-binding transcription factor involved in salt stress signaling. | 0 |
| RefSeq | XP_009114323.2 | transcription factor bHLH28 [Brassica rapa] | 0 |
| Q9LUK7 | Transcription factor bHLH28 OS=Arabidopsis thaliana OX=3702 GN=BHLH28 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7V5Z7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_030812 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology