Basic Information
Locus ID:
BniB04g013780.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 6673695 | 6674180 | - | BniB04g013780.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.38 | 17,552.67 Da | 24.97 | 93.42 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 87 | 149 | 2.57002E-17 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 86 | 148 | 2.9E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 11 | 72 | 2.7E-11 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 4 | 149 | 1.94E-40 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 154 | 7.5E-43 | - |
| SMART | SM00054 | efh_1 | 12 | 40 | 0.0066 | IPR002048 |
| SMART | SM00054 | efh_1 | 87 | 115 | 3.5E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 48 | 76 | 4.0 | IPR002048 |
| SMART | SM00054 | efh_1 | 123 | 151 | 6.5E-7 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 83 | 118 | 14.736568 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 119 | 154 | 12.309669 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 8 | 43 | 13.955498 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 44 | 79 | 8.627476 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 57 | 69 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 21 | 33 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 132 | 144 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 96 | 108 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_033136463.1 | probable calcium-binding protein CML16 [Brassica rapa] | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7S7L7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_030635 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology