Basic Information
Locus ID:
BniB04g013180.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 6401513 | 6408346 | - | BniB04g013180.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 111,843.71 Da | 27.79 | 98.43 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 686 | 947 | 1.77781E-90 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 683 | 945 | 3.7E-45 | IPR001245 |
| Pfam | PF11721 | Malectin domain | 422 | 599 | 1.6E-34 | IPR021720 |
| Pfam | PF13855 | Leucine rich repeat | 287 | 346 | 8.8E-7 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 658 | 947 | 9.7E-78 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 93 | 407 | 1.26E-46 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 756 | 960 | 9.9E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 642 | 755 | 1.6E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 199 | 410 | 2.3E-40 | IPR032675 |
| Gene3D | G3DSA:2.60.120.430 | - | 422 | 600 | 9.6E-27 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 198 | 2.2E-23 | IPR032675 |
| SMART | SM00220 | serkin_6 | 680 | 928 | 8.3E-26 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 680 | 937 | 35.877052 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 686 | 708 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 799 | 811 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56140.1 | Leucine-rich repeat transmembrane protein kinase. | 0 |
| RefSeq | XP_013613553.1 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130 isoform X1 [Brassica oleracea var. oleracea] | 0 |
| C0LGH3 | Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana OX=3702 GN=At1g56140 PE=2 SV=2 | 0 | |
| TrEMBL | A0A078JP69 | BnaCnng58230D protein OS=Brassica napus OX=3708 GN=BnaCnng58230D PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology