Basic Information
Locus ID:
BniB04g012650.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the SKP1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 6094672 | 6095187 | - | BniB04g012650.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.53 | 19,171.40 Da | 52.15 | 89.01 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18322 | BTB_POZ_SKP1 | 18 | 133 | 1.63837E-46 | - |
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 17 | 75 | 8.4E-22 | IPR016073 |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 120 | 166 | 5.4E-25 | IPR016072 |
| SUPERFAMILY | SSF54695 | POZ domain | 18 | 75 | 8.16E-18 | IPR011333 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 92 | 165 | 1.83E-28 | IPR036296 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 12 | 169 | 2.5E-61 | IPR011333 |
| SMART | SM00512 | skp1_3 | 16 | 118 | 1.0E-39 | IPR001232 |
| PIRSF | PIRSF028729 | SCF_Skp | 1 | 169 | 7.3E-56 | IPR016897 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10230.1 | SKP1-like 18. | 0 |
| RefSeq | XP_009123589.1 | SKP1-like protein 14 [Brassica rapa] | 0 |
| Q9SY65 | SKP1-like protein 18 OS=Arabidopsis thaliana OX=3702 GN=ASK18 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7S8J6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_030531 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g25200.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g012650.2N |