Basic Information
Locus ID:
BniB04g012350.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 5920124 | 5923954 | + | BniB04g012350.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 136,712.80 Da | 31.73 | 105.21 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 34 | 75 | 6.7E-11 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 959 | 1227 | 5.6E-46 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 657 | 679 | 0.65 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 128 | 187 | 5.1E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 346 | 405 | 2.3E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 273 | 332 | 5.7E-10 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 782 | 837 | 1.2E-9 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 490 | 549 | 1.2E-6 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 103 | 125 | 0.51 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 938 | 1228 | 1.48E-72 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 587 | 840 | 4.19E-52 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 341 | 649 | 2.61E-61 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 83 | 406 | 4.71E-67 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 481 | 582 | 1.2E-29 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1033 | 1248 | 7.0E-58 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 186 | 288 | 1.3E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 33 | 185 | 5.0E-43 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 289 | 385 | 1.7E-29 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 583 | 653 | 2.6E-14 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 386 | 480 | 5.9E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 654 | 875 | 8.4E-73 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 917 | 1032 | 1.3E-24 | - |
| SMART | SM00365 | LRR_sd22_2 | 392 | 418 | 55.0 | - |
| SMART | SM00220 | serkin_6 | 954 | 1230 | 2.7E-33 | IPR000719 |
| SMART | SM00365 | LRR_sd22_2 | 536 | 562 | 340.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 800 | 819 | 15.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 440 | 472 | 640.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 295 | 318 | 580.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 703 | 729 | 270.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 101 | 127 | 46.0 | - |
| SMART | SM00369 | LRR_typ_2 | 319 | 343 | 50.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 246 | 270 | 17.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 416 | 438 | 43.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 295 | 318 | 11.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 488 | 512 | 230.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 536 | 560 | 97.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 150 | 173 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 679 | 703 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 198 | 222 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 440 | 464 | 47.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 101 | 125 | 370.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 727 | 751 | 25.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 800 | 824 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 392 | 415 | 110.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 954 | 1235 | 39.311615 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1077 | 1089 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 960 | 983 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 298 | 311 | 7.4E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 800 | 813 | 7.4E-6 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G44700.1 | Leucine-rich repeat transmembrane protein kinase. Encodes GASSHO2 (GSO2), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO2 and a homolog GSO1 (At4g20140) are required for the formation of a normal epidermal surface during embryogenesis. | 0 |
| RefSeq | XP_018439032.1 | PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Raphanus sativus] | 0 |
| Q9FIZ3 | LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana OX=3702 GN=GSO2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6J0JTN2 | LRR receptor-like serine/threonine-protein kinase GSO2 OS=Raphanus sativus OX=3726 GN=LOC108811483 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20940 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6128 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036301 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g202710 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27650, Sbi_jg32801 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7675 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027425 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl12227, Sgl12234, Sgl12235, Sgl12308, Sgl17459, Sgl17591 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016888, gene:ENSEOMG00000035584 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0019220, CQ.Regalona.r1.1BG0003910 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30078690, pistato.v30221030 |
| Apiaceae | Apium graveolens | 2 | Ag9G02451, Ag9G02551 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G012640 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711425 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1096.V1.1, AsparagusV1_07.3834.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G21292 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G20140.1, AT5G44700.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000741m.g.v1.0, Thhalv10027256m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g09510.v2.2, Sp7g18570.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g061980.2N, BniB04g012350.2N, BniB05g016420.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0019 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0041 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g02600 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g23060 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3044 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.296 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012892 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37611, Lb2G08321 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3058, BH03.3231, CH03.3428 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0568160, gene-QOZ80_7BG0599550 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0145150.1 |
| Poaceae | Oryza coarctata | 2 | Oco13G007890, Oco14G008400 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g31500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G283700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304122 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr19G005990, Chr24G007800, Chr28G007130 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G423300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG030670, gene_TRIDC2BG034330 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G230100.1, TraesCS2B02G251700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb105400_P001, Zm00001eb321900_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6472 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.799, evm.TU.LG23.208 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g08020 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1047 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13449 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5337 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9270 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.295 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004138 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18211 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7663 |
| Salicaceae | Populus euphratica | 2 | populus_peu03839, populus_peu34677 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603102 |
| Solanaceae | Solanum chilense | 1 | SOLCI005847100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018927 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6271 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0297 |
| Zosteraceae | Zostera marina | 1 | Zosma03g25060.v3.1 |