Basic Information
Locus ID:
BniB04g012320.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
MAP kinase kinase kinase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 5905779 | 5911269 | + | BniB04g012320.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.23 | 71,696.05 Da | 55.38 | 76.77 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 342 | 590 | 4.1E-38 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 18 | 266 | 1.2E-38 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 15 | 282 | 2.97E-56 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 339 | 608 | 1.64E-57 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 11 | 283 | 6.9E-50 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 330 | 623 | 1.6E-49 | - |
| SMART | SM00220 | serkin_6 | 15 | 266 | 1.4E-52 | IPR000719 |
| SMART | SM00220 | serkin_6 | 339 | 590 | 1.8E-51 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 15 | 266 | 36.117329 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 339 | 590 | 35.551968 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 458 | 470 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 134 | 146 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40560.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_009123612.3 | mitogen-activated protein kinase kinase kinase 3-like [Brassica rapa] | 0 |
| Q9SND6 | Mitogen-activated protein kinase kinase kinase 20 OS=Arabidopsis thaliana OX=3702 GN=MAPKKK20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7V4H0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_030498 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G40500.1, AT2G40560.1 |
| Brassicaceae | Eutrema salsugineum | 9 | Thhalv10012219m.g.v1.0, Thhalv10017514m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g04290.v2.2, Sp2g09540.v2.2 |
| Brassicaceae | Brassica nigra | 15 | BniB01g004780.2N, BniB02g062010.2N, BniB03g062440.2N ... |