Basic Information
Locus ID:
BniB04g012310.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
MAP kinase kinase kinase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 5902117 | 5903079 | + | BniB04g012310.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 35,873.56 Da | 57.85 | 78.91 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 22 | 270 | 6.3E-39 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 19 | 288 | 2.22E-58 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 11 | 305 | 2.2E-50 | - |
| SMART | SM00220 | serkin_6 | 19 | 270 | 1.8E-51 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 19 | 270 | 35.551968 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 138 | 150 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40560.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_009123612.3 | mitogen-activated protein kinase kinase kinase 3-like [Brassica rapa] | 0 |
| Q9SND6 | Mitogen-activated protein kinase kinase kinase 20 OS=Arabidopsis thaliana OX=3702 GN=MAPKKK20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7S8Q4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_030494 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G40500.1, AT2G40560.1 |
| Brassicaceae | Eutrema salsugineum | 9 | Thhalv10012219m.g.v1.0, Thhalv10017514m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g04290.v2.2, Sp2g09540.v2.2 |
| Brassicaceae | Brassica nigra | 15 | BniB01g004780.2N, BniB02g062010.2N, BniB03g062440.2N ... |