Basic Information
Locus ID:
BniB04g011430.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 5439361 | 5442487 | + | BniB04g011430.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 78,265.99 Da | 51.94 | 88.54 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 417 | 666 | 7.3E-16 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 70 | 7.3E-12 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 416 | 686 | 1.67E-31 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 31 | 190 | 7.4E-24 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 376 | 485 | 1.5E-12 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 486 | 679 | 1.2E-27 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 216 | 6.9E-33 | IPR032675 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 365 | 670 | 12.937571 | IPR000719 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 25 | 5.0 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45840.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_009128820.1 | protein MALE DISCOVERER 1 [Brassica rapa] | 0 |
| C0LGU7 | Protein MALE DISCOVERER 1 OS=Arabidopsis thaliana OX=3702 GN=MDIS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7S8R9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_030428 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology