Basic Information
Locus ID:
BniB04g010550.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 5022156 | 5025392 | + | BniB04g010550.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 73,457.05 Da | 50.76 | 86.33 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 355 | 612 | 6.75153E-94 | - |
| Pfam | PF01657 | Salt stress response/antifungal | 35 | 129 | 2.8E-8 | IPR002902 |
| Pfam | PF00069 | Protein kinase domain | 350 | 550 | 7.3E-48 | IPR000719 |
| Pfam | PF01657 | Salt stress response/antifungal | 158 | 249 | 3.1E-9 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 333 | 639 | 1.12E-79 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 149 | 252 | 9.6E-18 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 26 | 132 | 4.2E-11 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 425 | 619 | 4.3E-57 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 310 | 424 | 3.6E-39 | - |
| SMART | SM00220 | serkin_6 | 349 | 615 | 3.9E-35 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 24 | 133 | 13.492605 | IPR002902 |
| ProSiteProfiles | PS50835 | Ig-like domain profile. | 571 | 654 | 6.777954 | IPR007110 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 141 | 252 | 16.108662 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 349 | 620 | 39.580158 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 355 | 377 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 470 | 482 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 631 | 654 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04540.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 39. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_013677279.1 | putative cysteine-rich receptor-like protein kinase 39 isoform X2 [Brassica napus] | 0 |
| Q9SYS7 | Putative cysteine-rich receptor-like protein kinase 39 OS=Arabidopsis thaliana OX=3702 GN=CRK39 PE=3 SV=1 | 0 | |
| TrEMBL | A0A398AH19 | Protein kinase domain-containing protein OS=Brassica campestris OX=3711 GN=BRAA02T08086Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 3 | AT4G04500.1, AT4G04540.1, AT4G04570.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10028430m.g.v1.0, Thhalv10028504m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp6g04360.v2.2, Sp6g04390.v2.2, SpUn0392_0010.v2.2 |
| Brassicaceae | Brassica nigra | 15 | BniB04g010550.2N, BniB05g056170.2N, BniB08g026560.2N ... |