halophFGD

Basic Information

Locus ID: BniB04g009870.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B4	4750292	4751671	-	BniB04g009870.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.08	53,399.11 Da	55.03	77.67	-0.46

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	89	124	3.9E-5	IPR001810
SUPERFAMILY	SSF81383	F-box domain	82	135	1.07E-9	IPR036047
SMART	SM00256	fbox_2	87	127	6.6E-5	IPR001810
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	186	384	3.8E-17	IPR017451
MobiDBLite	mobidb-lite	consensus disorder prediction	59	79	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT2G02030.1	F-box family protein.	0
RefSeq	XP_018435728.1	PREDICTED: putative F-box protein At2g02030 [Raphanus sativus]	0
Swiss-Prot	Q9ZPS1	Putative F-box protein At2g02030 OS=Arabidopsis thaliana OX=3702 GN=At2g02030 PE=4 SV=1	0
TrEMBL	A0A8X7S960	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_030418 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	15	AT1G09650.1, AT1G11270.1, AT1G12490.1, AT1G12855.1 ... AT1G12870.1, AT1G13200.1, AT1G14315.2, AT1G15015.1, AT2G02030.1, AT2G05600.1, AT2G34280.1, AT3G25550.1, AT4G01640.1, AT5G10340.1, AT5G16285.1
Brassicaceae	Eutrema salsugineum	30	Thhalv10000283m.g.v1.0, Thhalv10002950m.g.v1.0 ... Thhalv10003053m.g.v1.0, Thhalv10005403m.g.v1.0, Thhalv10005596m.g.v1.0, Thhalv10005640m.g.v1.0, Thhalv10005659m.g.v1.0, Thhalv10005704m.g.v1.0, Thhalv10006448m.g.v1.0, Thhalv10006469m.g.v1.0, Thhalv10007816m.g.v1.0, Thhalv10007821m.g.v1.0, Thhalv10009459m.g.v1.0, Thhalv10009591m.g.v1.0, Thhalv10009680m.g.v1.0, Thhalv10009780m.g.v1.0, Thhalv10009873m.g.v1.0, Thhalv10010027m.g.v1.0, Thhalv10011073m.g.v1.0, Thhalv10012265m.g.v1.0, Thhalv10016004m.g.v1.0, Thhalv10017550m.g.v1.0, Thhalv10017844m.g.v1.0, Thhalv10021927m.g.v1.0, Thhalv10021998m.g.v1.0, Thhalv10022335m.g.v1.0, Thhalv10023120m.g.v1.0, Thhalv10026946m.g.v1.0, Thhalv10028258m.g.v1.0, Thhalv10028312m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g27610.v2.2, Sp2g14700.v2.2, Sp6g09040.v2.2 ... SpUn0138_0020.v2.2
Brassicaceae	Brassica nigra	27	BniB01g008490.2N, BniB02g006100.2N, BniB02g006160.2N ... BniB02g007700.2N, BniB02g007710.2N, BniB02g007720.2N, BniB02g007750.2N, BniB02g042290.2N, BniB02g042300.2N, BniB02g044690.2N, BniB02g052300.2N, BniB03g005530.2N, BniB03g006010.2N, BniB03g015920.2N, BniB03g022450.2N, BniB04g008600.2N, BniB04g009830.2N, BniB04g009870.2N, BniB04g014510.2N, BniB04g027260.2N, BniB04g039550.2N, BniB04g054100.2N, BniB04g054110.2N, BniB05g015500.2N, BniB05g065960.2N, BniB07g019140.2N, BniB08g072430.2N
Plantaginaceae	Plantago ovata	1	Pov_00035511