Basic Information
Locus ID:
BniB04g009690.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Contains the following InterPro domains WD40 repeat-like-containing domain (InterPro IPR011046), WD40 repeat 2 (InterPro IPR019782), WD40-repeat-containing domain (InterPro IPR017986), WD40 repeat (InterPro IPR001680), WD40 YVTN repeat-like-containing domain (InterPro IPR015943), WD40 repeat, subgroup (InterPro IPR019781)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 4665220 | 4667433 | + | BniB04g009690.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 43,425.01 Da | 35.49 | 85.94 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 157 | 179 | 0.016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 324 | 352 | 0.011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 77 | 352 | 7.94E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 15 | 360 | 3.0E-63 | IPR015943 |
| SMART | SM00320 | WD40_4 | 184 | 221 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 142 | 180 | 0.0049 | IPR001680 |
| SMART | SM00320 | WD40_4 | 87 | 125 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 273 | 312 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 314 | 355 | 0.042 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 53 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_013724232.1 | SEC12-like protein 2 [Brassica napus] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A078ITJ6 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=BnaCnng22210D PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology