Basic Information
Locus ID:
BniB04g009530.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 4600881 | 4603261 | + | BniB04g009530.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 53,527.22 Da | 36.28 | 95.03 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07983 | X8 domain | 360 | 431 | 1.1E-20 | IPR012946 |
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 23 | 342 | 3.5E-87 | IPR000490 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 23 | 342 | 2.98E-89 | IPR017853 |
| Gene3D | G3DSA:1.20.58.1040 | - | 353 | 459 | 4.4E-11 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 22 | 348 | 1.9E-118 | - |
| SMART | SM00768 | X8_cls | 359 | 444 | 5.2E-50 | IPR012946 |
| ProSitePatterns | PS00587 | Glycosyl hydrolases family 17 signature. | 257 | 270 | - | IPR000490 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01630.1 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_009129217.1 | glucan endo-1,3-beta-glucosidase 3 [Brassica rapa] | 0 |
| Q9ZU91 | Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana OX=3702 GN=At2g01630 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7S888 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_030381 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology