Basic Information
Locus ID:
BniB04g009390.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 4543470 | 4546536 | + | BniB04g009390.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.58 | 106,515.11 Da | 34.95 | 91.17 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 626 | 903 | 4.44165E-95 | - |
| Pfam | PF00069 | Protein kinase domain | 621 | 898 | 4.8E-48 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 78 | 111 | 0.0043 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 375 | 409 | 0.0014 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 413 | 472 | 3.9E-8 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 608 | 926 | 2.93E-80 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 75 | 350 | 6.12E-47 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 375 | 478 | 2.86E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 78 | 367 | 1.1E-80 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 373 | 497 | 5.4E-32 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 580 | 697 | 2.3E-37 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 698 | 917 | 8.1E-58 | - |
| SMART | SM00220 | serkin_6 | 620 | 905 | 8.0E-44 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 235 | 259 | 28.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 435 | 459 | 230.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 160 | 183 | 0.0022 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 620 | 903 | 40.583675 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 139 | 161 | 7.041994 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 745 | 757 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 626 | 648 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 933 | 965 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 934 | 965 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01820.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_048604270.1 | receptor-like kinase TMK3 [Brassica napus] | 0 |
| Q9SIT1 | Receptor-like kinase TMK3 OS=Arabidopsis thaliana OX=3702 GN=TMK3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A816KJJ0 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_C02P49960.1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology