Basic Information
Locus ID:
BniB04g008600.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 4097674 | 4098819 | + | BniB04g008600.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 43,824.79 Da | 44.16 | 83.83 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 229 | 319 | 2.0E-12 | IPR006527 |
| Pfam | PF00646 | F-box domain | 16 | 55 | 9.0E-12 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 16 | 65 | 1.11E-11 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 198 | 310 | 6.28E-7 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 179 | 364 | 1.3E-5 | IPR015915 |
| SMART | SM00256 | fbox_2 | 19 | 58 | 6.3E-11 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 119 | 313 | 2.6E-21 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 13 | 58 | 11.775988 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11270.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_048600005.1 | F-box protein At1g11270-like [Brassica napus] | 0 |
| Q7X7A9 | F-box protein At1g11270 OS=Arabidopsis thaliana OX=3702 GN=At1g11270 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7S827 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_030291 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 15 | AT1G09650.1, AT1G11270.1, AT1G12490.1, AT1G12855.1 ... |
| Brassicaceae | Eutrema salsugineum | 30 | Thhalv10000283m.g.v1.0, Thhalv10002950m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g27610.v2.2, Sp2g14700.v2.2, Sp6g09040.v2.2 ... |
| Brassicaceae | Brassica nigra | 27 | BniB01g008490.2N, BniB02g006100.2N, BniB02g006160.2N ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00035511 |