Basic Information
Locus ID:
BniB04g008100.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 3846261 | 3847792 | - | BniB04g008100.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 55,644.91 Da | 43.45 | 90.97 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01603 | Protein phosphatase 2A regulatory B subunit (B56 family) | 58 | 472 | 5.4E-172 | IPR002554 |
| SUPERFAMILY | SSF48371 | ARM repeat | 70 | 455 | 1.58E-143 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 66 | 473 | 2.5E-180 | IPR011989 |
| PIRSF | PIRSF028043 | PP2A_B56 | 8 | 484 | 6.2E-219 | IPR002554 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 54 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04113 (Meiosis - yeast)
map04113 (Meiosis - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26030.1 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta. protein phosphatase 2A regulatory subunit isoform B' delta | 0 |
| RefSeq | XP_013620877.1 | PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B' delta isoform-like [Brassica oleracea var. oleracea] | 0 |
| Q9ZQY6 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B' delta isoform OS=Arabidopsis thaliana OX=3702 GN=B'DELTA PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7V458 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_030240 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology