Basic Information
Locus ID:
BniB04g007720.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
AFB2
Description:
auxin signaling f-box
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 3672497 | 3674727 | - | BniB04g007720.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 64,700.84 Da | 46.55 | 96.65 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 2 | 42 | 4.0E-20 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 62 | 107 | 5.9E-23 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 16 | 534 | 1.67E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 576 | 1.2E-173 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 1.0E-17 | - |
| SMART | SM00367 | LRR_CC_2 | 283 | 308 | 480.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 99 | 123 | 340.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 124 | 149 | 84.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 426 | 449 | 490.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 366 | 390 | 8.1 | IPR006553 |
| SMART | SM00256 | fbox_2 | 4 | 45 | 0.003 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_009129474.1 | protein AUXIN SIGNALING F-BOX 2 [Brassica rapa] | 0 |
| Q9LW29 | Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana OX=3702 GN=AFB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7S8G4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_030207 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology