halophFGD

Basic Information

Locus ID: BniB04g007550.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: ABC transporter E family member

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B4	3599737	3600416	+	BniB04g007550.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.59	19,749.46 Da	60.04	90.06	-0.55

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	4	39	2.4E-9	IPR001810
SUPERFAMILY	SSF81383	F-box domain	2	72	1.44E-10	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	1	56	2.3E-5	-
SMART	SM00256	fbox_2	7	47	1.9E-6	IPR001810
MobiDBLite	mobidb-lite	consensus disorder prediction	147	161	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	143	173	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K06174 (ATP-binding cassette, sub-family E, member 1)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G49510.1	F-box family protein.
RefSeq	XP_018453970.1	PREDICTED: LOW QUALITY PROTEIN: F-box protein At3g49510-like [Raphanus sativus]
Swiss-Prot	Q9CA02	F-box protein At3g49510 OS=Arabidopsis thaliana OX=3702 GN=At3g49510 PE=2 SV=1
TrEMBL	A0A6D2ITH0	F-box domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS18361 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	24	AT1G24800.1, AT1G24881.1, AT1G25055.1, AT1G25150.1 ... AT1G25211.1, AT1G32140.1, AT1G54550.1, AT1G59680.1, AT1G66490.1, AT1G67450.1, AT1G67455.1, AT2G33655.1, AT3G13680.1, AT3G13820.1, AT3G14030.1, AT3G19880.1, AT3G19890.1, AT3G20030.1, AT3G20400.1, AT3G49510.1, AT3G49520.1, AT4G05080.1, AT4G17200.1, AT5G60560.1
Brassicaceae	Eutrema salsugineum	15	Thhalv10000447m.g.v1.0, Thhalv10002786m.g.v1.0 ... Thhalv10003097m.g.v1.0, Thhalv10009753m.g.v1.0, Thhalv10009944m.g.v1.0, Thhalv10015452m.g.v1.0, Thhalv10019643m.g.v1.0, Thhalv10022026m.g.v1.0, Thhalv10022402m.g.v1.0, Thhalv10023084m.g.v1.0, Thhalv10023095m.g.v1.0, Thhalv10023820m.g.v1.0, Thhalv10023848m.g.v1.0, Thhalv10024142m.g.v1.0, Thhalv10027178m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g11150.v2.2, Sp3g32750.v2.2
Brassicaceae	Brassica nigra	13	BniB01g039260.2N, BniB02g015480.2N, BniB04g007550.2N ... BniB04g047270.2N, BniB05g002470.2N, BniB05g017590.2N, BniB06g018860.2N, BniB06g051530.2N, BniB07g030840.2N, BniB07g031550.2N, BniB07g055480.2N, BniB08g028340.2N, BniB08g067670.2N