Basic Information
Locus ID:
BniB04g006950.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 3369766 | 3371055 | + | BniB04g006950.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 49,224.03 Da | 45.37 | 93.73 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 49 | 79 | 1.1E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 38 | 104 | 2.88E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 43 | 81 | 3.9E-6 | - |
| SMART | SM00256 | fbox_2 | 45 | 84 | 7.5E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 39 | 88 | 8.941087 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G28330.1 | F-box family protein-related. | 0 |
| RefSeq | XP_013620031.1 | PREDICTED: LOW QUALITY PROTEIN: F-box protein At3g28330-like [Brassica oleracea var. oleracea] | 0 |
| Q9LHD3 | F-box protein At3g28330 OS=Arabidopsis thaliana OX=3702 GN=At3g28330 PE=4 SV=2 | 0 | |
| TrEMBL | A0A816KIA8 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_C02P54750.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 10 | AT1G15680.1, AT1G49990.1, AT3G23950.1, AT3G23970.1 ... |
| Brassicaceae | Eutrema salsugineum | 14 | Thhalv10000704m.g.v1.0, Thhalv10001535m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 6 | Sp1g36850.v2.2, Sp2g04630.v2.2, Sp3g21990.v2.2 ... |
| Brassicaceae | Brassica nigra | 20 | BniB01g029840.2N, BniB01g029880.2N, BniB01g037070.2N ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032378 |