Basic Information
Locus ID:
BniB04g006560.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 3212388 | 3213158 | - | BniB04g006560.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.14 | 29,466.19 Da | 50.62 | 100.47 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 54 | 87 | 8.4E-8 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 53 | 113 | 1.17E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 43 | 144 | 1.0E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 54 | 109 | 10.158304 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 73 | 82 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 161 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013616382.1 | PREDICTED: uncharacterized protein LOC106322793 [Brassica oleracea var. oleracea] | 0 |
| TrEMBL | A0A8X7S8I8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_030088 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology