Basic Information
Locus ID:
BniB04g005300.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B4 | 2616340 | 2617419 | + | BniB04g005300.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 40,899.02 Da | 42.62 | 89.16 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 9 | 39 | 1.2E-8 | IPR001810 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 111 | 264 | 1.2E-5 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 54 | 6.02E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 45 | 1.3E-10 | - |
| SMART | SM00256 | fbox_2 | 9 | 48 | 6.1E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 95 | 324 | 6.0E-16 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 3 | 52 | 11.272594 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49610.1 | F-box family protein. | 0 |
| RefSeq | XP_013677986.1 | F-box protein At5g49610 [Brassica napus] | 0 |
| Q9FGY4 | F-box protein At5g49610 OS=Arabidopsis thaliana OX=3702 GN=At5g49610 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7R918 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_055211 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28129 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2911 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019312 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g054650 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15265, Sbi_jg56075 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26558 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006272 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl01657, Sgl01679, Sgl06832 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002891, gene:ENSEOMG00000029218 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0017000, CQ.Regalona.r1.3AG0000080 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30232740 |
| Apiaceae | Apium graveolens | 1 | Ag5G01762 |
| Arecaceae | Cocos nucifera | 1 | contig69637507G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719309 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3247.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G11851 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G49610.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004464m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g19920.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g005300.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1384 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1475 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g01500 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9327 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1153 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00022555, Pov_00030867, Pov_00037721 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1374, evm.TU.LG07.1500 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.680 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1293 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18461 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6364 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.330 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18830 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13113 |
| Salicaceae | Populus euphratica | 3 | populus_peu09642, populus_peu20774, populus_peu37023 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132604484 |
| Solanaceae | Solanum chilense | 1 | SOLCI001641900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005357 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.8020_chr04_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1386 |